Publications

Integrative Analysis of Amyloid Imaging and Genetics Reveals Subtypes of Alzheimer Progression in Early Stage

He, B., Sangani, N., Wu, R., Varathan, P., Patania, A., Risacher, S.L., Nho, K., Apostolova, L.G., Saykin, A.J., Shen, L., & Yan, J. (2024). Integrative Analysis of Amyloid Imaging and Genetics Reveals Subtypes of Alzheimer Progression in Early Stage. In International Conference on Artificial Intelligence in Medicine (pp. 204-211).

Exact and rapid linear clustering of networks with dynamic programming

Patania, A., Allard, A., & Young, J.G. (2023). Exact and rapid linear clustering of networks with dynamic programming. Proceedings of the Royal Society A, 479(2275), 20230159.

XGI: A Python package for higher-order interaction networks

Landry, N.W., Lucas, M., Iacopini, I., Petri, G., Schwarze, A., Patania, A., & Torres, L. (2023). XGI: A Python package for higher-order interaction networks. Journal of Open Source Software, 8(85), 5162.

Nerve theorems for fixed points of neural networks

Santander, D.E., Ebli, S., Patania, A., Sanderson, N., Burtscher, F., Morrison, K., et al. (2023). Nerve theorems for fixed points of neural networks. Research in Computational Topology, 2, 129-165.

Topological learning for motion data via mixed coordinates

Luo, H., Kim, J., Patania, A., & Vejdemo-Johansson, M. (2021). Topological learning for motion data via mixed coordinates. In 2021 IEEE International Conference on Big Data (pp. 3853-3859).

Topological analysis of differential effects of ketamine and propofol anaesthesia on brain dynamics

Varley, T.F., Denny, V., Sporns, O., & Patania, A. (2021). Topological analysis of differential effects of ketamine and propofol anaesthesia on brain dynamics. Royal Society Open Science, 8(6), 201971.

Choices in networks: a research framework

Feinberg F, Bruch E, Braun M, Falk BH, Fefferman N, Feit EM, Helveston J, Larremore D, McShane BB, Patania A, Small ML. Marketing Letters.. 2020 Dec;31(4):349-59.

Networks beyond pairwise interactions: structure and dynamics.

Battiston F, Cencetti G, Iacopini I, Latora V, Lucas M, Patania A, Young J-G and Petri G. Physics Reports.. (2020) 874 1-92

Topological gene-expression networks recapitulate brain anatomy and function.

Patania, A., Selvaggi, P., Veronese, M., DiPasquale, O., Expert, P., & Petri, G. (2019). Network Neuroscience, 3:3, 744-762.

The shape of collaborations.

Patania, A., Petri, G., & Vaccarino, F. (2017). EPJ Data Science. 6(1), 18.

Topological analysis of data

Patania, A., Vaccarino, F., & Petri, G. (2017). EPJ Data Science. 6(1), 7.

Navigating features: a topologically informed chart of electromyographic features space.

Phinyomark, A., Khushaba, R. N., Ibánez-Marcelo, E., Patania, A., Scheme, E., & Petri, G. (2017). Journal of The Royal Society Interface, 14(137), 20170734.

Construction of and efficient sampling from the simplicial configuration model

Young, J. G., Petri, G., Vaccarino, F., & Patania, A. (2017). Physical Review E. 96(3), 032312.

P-persistent homology of finite topological spaces

Vaccarino, F., Patania, A., & Petri, G. (2017). Rendiconti Sem. Mat. Univ. Pol. Torino. Vol. 74, 1. 27 - 45.

Pre-prints

The topology of synergy: linking topological and information-theoretic approaches to higher-order interactions in complex systems

Varley, T.F., Mediano, P.A.M., Patania, A., & Bongard, J. (2025). The topology of synergy: linking topological and information-theoretic approaches to higher-order interactions in complex systems. arXiv preprint arXiv:2504.10140.

Alice Patania