TDA summary for gene-expression: Mapper Algorithm in 2D

Code for reproducing results in the paper “Topological gene-expression networks recapitulate brain anatomy and function”.
We present a pipeline based on the Mapper algorithm, a topological simplification tool, to produce and analyze genes co-expression data.
The code contains an implementation of the Mapper algorithm with 2 filters and to compute the agreement edge density matrices for the optimal parameters.


A small script that looks for unread Google Scholar Alerts emails in your Gmail account and saves each paper in a Google Spreadsheet as:
Title/ Authors - Journal/ Google Scholar link/ Date/ number of Alerts that contained the paper